Objective To identify the common species of sandflies in Haikou city based on morphological characteristics, and determine the species specific molecular identity. Methods Sandflies were collected overnight by light-trap monthly in the pigsty, chicken or duck coops or human dwellings around village and urban-rural fringe areas in Haikou city during August 2015 to July 2016, as well as in Sansha city in August, 2017. After counting, partial sandflies were randomly selected and classified by morphological characteristics. Then the genomic DNA was extracted from identified specimens, the mtDNA Cytb gene fragment was sequenced and analyzed to determine the species-specific molecular identity. The sandflies collected from Sansha city were identified by molecular marker, and the taxonomic status was discussed. Results A total of 377 sandflies samples were collected in Haikou city, which belonged to 4 species in 2 genera, as Sergentomyia bailyi Sinton, S.iyengari Sinton, S. squamipleuris Newstead, and Phleboto musstantoni Newstead. The sandflies adults were active throughout the year with the peak of density in June and November. The intraspecific genetic distance of mtDNA Cytb gene sequences among the 4 species was from 0 to 0.046. The range of the interspecific distance among the 9 species (including 5 species mtDNA Cytb gene sequences downloaded from NCBI database) was from 0.112 (P. wui with P. chinensis) to 0.219 (P. stantoni and P. caucasicus). All sandflies specimen collected from Sansha city were S. bailyi by molecular identity. The most genetic distance was 0.049 between Haikou and Sansha population. Conclusion Sandflies were active throughout the year in Haikou city, including two peaks of density. The identity of mtDNA Cytb gene sequences of 4 common sandflies in Hainan province was identified. There was obvious genetic divergence in S. bailyi populations.
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