调查研究

秦皇岛口岸褐家鼠携带汉坦病毒S基因序列分析

展开
  • 1 河北国际旅行卫生保健中心, 石家庄 050091;
    2 河北省食品检验研究院, 石家庄 050000;
    3 秦皇岛出入境检验检疫局, 河北 秦皇岛 066004
李云,女,医学硕士,副主任检验师,副科长,从事卫生检疫工作,Email:liyun0302@aliyun.com

收稿日期: 2017-06-21

  网络出版日期: 2017-10-20

S gene sequence analysis of Hantavirus carried by the Rattus norvegicus from Qinhuangdao port

Expand
  • 1 Hebei International Travel Health Center, Shijiazhuang 050091, Hebei Province, China;
    2 Hebei Food Inspection and Research Institute;
    3 Qinhuangdao Entry-Exit Inspection and Quarantine Bureau

Received date: 2017-06-21

  Online published: 2017-10-20

摘要

目的 了解河北省秦皇岛口岸褐家鼠携带汉坦病毒情况及其基因型。方法 褐家鼠标本于2016年7月28日采自河北省秦皇岛港渤海船务有限公司货堆区和生活区,运用实时荧光PCR检测标本汉坦病毒核酸并进行核苷酸同源性和进化树分析。结果 从1只褐家鼠中检测到汉坦病毒核酸阳性,经汉坦病毒S基因序列测定和同源性分析,与国内外汉城型(SEO型)汉坦病毒相似性较高(87.3%~97.9%),与汉滩型(HTN型)汉坦病毒及其他类型汉坦病毒相似性较低(<55%)。系统进化树显示该病毒株与SEO型汉坦病毒汇聚一支,且与S3亚型在同一分支,与辽宁省褐家鼠中的病毒株亲缘关系最近。结论 河北省秦皇岛口岸褐家鼠携带的汉坦病毒SEO型为S3亚型,与河北省所流行的汉坦病毒种类一致。

本文引用格式

李云, 史玲莉, 刘荐男, 闫冀焕, 聂维忠, 刘淑萍 . 秦皇岛口岸褐家鼠携带汉坦病毒S基因序列分析[J]. 中国媒介生物学及控制杂志, 2017 , 28(5) : 487 -489 . DOI: 10.11853/j.issn.1003.8280.2017.05.021

Abstract

Objective To understand the genetic type and characteristics of Hantavirus carried by Rattus norvegicus in Qinhuangdao port. Methods Real-time PCR and sequencing technology were applied to detect the nucleic acid of Hantavirus. And the homologous and phylogenetic analysis of positive sequence were also accomplished. Results One of the R. norvegicus showed positive result for Hantavirus. Homogeneous analysis demonstrated that the nucleic acid sequence of Hantavirus S gene was high identity with Seoul(SEO)virus from both home and abroad. Phylogenetic analysis showed that Qinhuangdao Hantavirus was clustering together with S3 sub- genotype of Seoul(SEO)virus, and was most closely related to the isolate from Liaoning province. Conclusion The genotype of hantavirus carried by R. norvegicus in Qinhuangdao is SEO virus and the sub-genotype is S3 which is consistent with the popular type of hantavirus in Hebei province.

参考文献

[1] Zhang YZ,Zhang HL,Dong XQ,et al. Hantavirus outbreak associated with laboratory rats in Yunnan,China[J]. Infect Genet Evol,2010,10(5):638-644.
[2] 章国宝,应丽红,雷永良. 汉坦病毒检测技术研究进展[J]. 中国病毒病杂志,2015,5(6):476-480.
[3] 白雪帆,王平忠. 肾综合征出血热和汉坦病毒肺综合征研究进展[J]. 中国病毒病杂志,2011,1(4):241-245.
[4] 徐永妮,曹梦远,叶伟,等. 汉坦病毒感染对Ⅰ型干扰素应答的调节机制[J]. 微生物学免疫学进展,2014,42(3):44-48.
[5] 韩占英,韩旭,魏亚梅,等. 2008-2012年河北省肾综合征出血热监测及流行特征研究[J]. 中国人兽共患病学报,2014, 30(9):947-950.
[6] Kang YJ,Zhou DJ,Tian JH,et al. Dynamics of hantavirus infections in humans and animals in Wuhan city,Hubei,China[J]. Infect Genet Evol,2012,12(8):1614-1621.
[7] 魏亚梅,韩旭,韩占英,等. 河北省肾综合征出血热主要流行区鼠携带汉坦病毒基因序列分析[J]. 中国病毒病杂志, 2013,3(6):435-438.
[8] 韩占英,张艳波,魏亚梅,等. 2007年河北省肾综合征出血热流行特征分析[J]. 中国媒介生物学及控制杂志,2009,20(3):243-245.
[9] 王芹,曲靖,张全福,等. 2013年全国肾综合征出血热疫情及监测分析[J]. 疾病监测,2015,30(6):440-447.
[10] Larkin MA,Blackshields G,Brown NP,et al. Clustal W and Clustal X version 2.0[J]. Bioinformatics,2007,23(21):2947-2948.
[11] Tamura K, Dudley J, Nei M, et al. Mega 4:Molecular evolutionary genetics analysis(Mega)software version 4.0[J]. Mol Biol Evol,2007,24(8):1596-1599.
[12] Felsenstein J. Confidence limits on phylogenies:an approach using the bootstrap[J]. Evolution,1985,39(4):783-791.
[13] 陶旭. 2013年秦皇岛市肾综合征出血热监测及疫情分析[J]. 职业与健康,2014,30(18):2646-2648.
[14] 聂维忠,陈爱君. 秦皇岛口岸一艘疫船流行性出血热暴发流行原因调查分析[J]. 口岸卫生控制,1999,4(2):20-21.
[15] 陶旭,彭勋,贾春辉,等. 2005-2013年秦皇岛市肾综合征出血热宿主动物监测分析[J]. 职业与健康,2015,31(21):2986-2988.
文章导航

/