中国土拉弗朗西斯菌数目可变串联重复多态性位点特有重复数的研究

王艳华, 彭遥, 夏连续

doi:10.11853/j.issn.1003.4692.2015.06.001

中国媒介生物学及控制杂志 >

2015 , Vol. 26 >Issue 6: 541 - 544

DOI: https://doi.org/10.11853/j.issn.1003.4692.2015.06.001

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中国土拉弗朗西斯菌数目可变串联重复多态性位点特有重复数的研究

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中国疾病预防控制中心传染病预防控制所鼠疫室, 传染病预防控制国家重点实验室, 北京 102206

王艳华,女,博士,研究员,从事细菌性感染的病原学及分子生物学研究,Email:wangyanhua@icdc.cn

收稿日期: 2015-06-29

网络出版日期: 2015-12-20

基金资助

国家自然科学基金(81473032); 国家“十二五”科技重大专项课题(2012ZX10004219-007)

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Studies on the unique repeat numbers of the VNTR in Chinese Francisella tularensis

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State Key Laboratory of Infectious Disease Prevention and Control, Department of Plague, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China

Received date: 2015-06-29

Online published: 2015-12-20

Supported by

Supported by the National Natural Science Foundation of China (No. 81473032) and Major National Science and Technology Projects of China (No. 2012ZX10004219-007)

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摘要

目的采用多位点可变数目串联重复分析(MLVA)方法研究中国土拉弗朗西斯菌(土拉菌)的遗传特征。方法根据以往文献,选取对B型土拉菌分辨力较高的12个数目可变串联重复多态性(VNTR),对10株中国土拉菌和29株已公布测序的参考菌株进行MLVA分型研究。结果 MLVA分析显示,中国菌株在4个VNTR位点具有特有的重复数:Ft-M3重复数是5,Ft-M18 重复数是1,Ft-M20重复数是2,Ft-M21重复数是2。12个VNTR位点组合分析,得出重复数比较接近的是:410108和日本FSC022;410112、410113和德国F92;410116、410117和美国OSU18、俄罗斯LVS。结论根据特有的重复数,通过检测Ft-M3、Ft-M18、Ft-M20和Ft-M21位点,可以把中国本土土拉菌和国外土拉菌区分开。另外,相对于欧美国家和日本,中国土拉菌具有更多的遗传多样性。

关键词： 土拉弗朗西斯菌holarctica亚种; 土拉热; 多位点可变数目串联重复分析; 数目可变串联重复多态性

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王艳华, 彭遥, 夏连续 . 中国土拉弗朗西斯菌数目可变串联重复多态性位点特有重复数的研究[J]. 中国媒介生物学及控制杂志, 2015 , 26(6) : 541 -544 . DOI: 10.11853/j.issn.1003.4692.2015.06.001

Abstract

Objective To explore the genetic feature of Chinese Francisella tularensis using MLVA (multiple-locus variable number tandem repeat analysis). Methods Based on previous studies, 12 VNTR (variable number of tandem repeats) were selected that have higher resolving power on type B, and MLVA typing was conducted on 10 strains of Chinese F. tularensis and 29 reference strains that have been sequenced and published. Results The MLVA analysis indicated that Chinese F. tularensis has the unique copy numbers at the four VNTR: the copy number of repeat motif is 5 at the Ft-M3, and that is 1 at the Ft-M18, 2 at the Ft-M20, and 2 at the Ft-M21. Combined 12 VNTR analysis showed that the copy numbers of repeat motif were similar among some F. tularensis strains as follow:410108 and Japanese FSC022; 410112, 410113 and German F92; 410116, 410117 and American OSU18, Russian LVS. Conclusion By examining the 4 VNTR i.e. Ft-M3, Ft-M18, Ft-M20 and Ft-M21, a given isolate can be determined whether it is indigenous to China according to the unique copy numbers of repeat motif. In addition, the Chinese F. tularensis has higher genetic diversity comparing with F. tularensis from Europe, USA and Japan.

Key words： Francisella tularensis subsp. holarctica; Tularemia; Multiple-locus variable number tandem repeat analysis; Variable number of tandem repeats

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