Chinese Journal of Vector Biology and Control >
The application of the tandem repeats in the Yersinia pestis genotyping
Received date: 2015-10-09
Online published: 2016-02-20
Supported by
Supported by the Medical Science Research Project in Hebei Province (No. ZL20140119)
The plague is categorized as a Class A infectious disease in China. Plague foci are widely distributed, and strains have different features and varied virulence in China. It is of great significance for deducing the sudden outbreak of plague and terrorist attack detection, with the strains of different foci for genotyping. The choice of tandem repeats loci is the key of the multiple loci vntr analysis (MLVA) classification results. This assay mainly introduces tandem repeats in Yersinia pestis genotyping in application progress, and provides a reference for other workers in genotyping.
WANG Hai-feng, LIU He-zhi, YANG Shun-lin, ZHOU Song, BAI Xue-wei, YANG Xiao-yan, ZHANG Yi-hui, CHEN Kai-le, LIANG Ying, SHI Xian-ming . The application of the tandem repeats in the Yersinia pestis genotyping[J]. Chinese Journal of Vector Biology and Control, 2016 , 27(1) : 89 -91 . DOI: 10.11853/j.issn.1003.4692.2016.01.028
[1] World Health Organization. Human plague in 1998 and 1999[J].Wkly Epidemiol Rec,2000,75(42):338-343.
[2] Nakamura Y, Leppert M, O'Connell P, et al. Variable number of tandem repeat (VNTR) markers for human gene mapping[J].Science,1987,235(4796):1616-1622.
[3] Devignat R. Varieties of Pasteurella pestis; new hypothesis[J].Bull World Health Organ,1951,4(2):247-263,316.
[4] 纪树立,张海崚,刘云鹏,等. 我国鼠疫菌分型及其生态学、流行病学意义[J].中国地方病学杂志,1987,6(5):257-262.
[5] Klevytska AM, Price LB, Schupp JM, et al. Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome[J].J Clin Microbiol,2001,39(9): 3179-3185.
[6] Pourcel C, André-Mazeaud F, Neubauer H, et al. Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis[J].BMC Microbiol,2004,4:22.
[7] Li YJ, Cui YJ, Cui BZ, et al. Features of variable number of tandem repeats in Yersinia pestis and the development of a hierarchical genotyping scheme[J].PLoS One,2013,8(6): e66567.
[8] Frothingham R, Meeker-O'Connell WA. Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats[J].Microbiology,1998,144(5):1189-1196.
[9] Poh CL, Ramachandran V, Tapsall JW. Genetic diversity of Neisseria gonorrhoeae IB-2 and IB-6 isolates revealed by whole-cell repetitive element sequence-based PCR[J].J Clin Microbiol,1996,34(2):292-295.
[10] Marshall DG, Coleman DC, Sullivan DJ,et al. Genomic DNA fingerprinting of clinical isolates of Helicobacter pylori using short oligonucleotide probes containing repetitive sequences[J].J Appl Bacteriol,1996,81(5):509-517.
[11] van Belkum A, Scherer S, van Leeuwen W, et al. Variable number of tandem repeats in clinical strains of Haemophilus influenzae[J].Infect Immun,1997,65(12):5017-5027.
[12] Keim P, Price LB,Klevytska AM, et al. Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis[J].J Bacteriol,2000,182(10):2928-2936.
[13] 付秀萍,俞东征,海荣. 利用M28串联重复序列对鼠疫菌进行基因分型[J].疾病控制杂志,2006,10(1):21-23.
[14] 张晓嫒. 中国鼠疫耶尔森菌多位点可变数目串联重复序列分析[D].北京:中国疾病预防控制中心,2008.
[15] 朱俊洁,王鹏,张蓉,等. 云南省鼠疫耶尔森菌多位点可变数目串联重复序列分析[J].疾病监测,2013,28(10):848-852.
[16] 王海峰,杨顺林,周松,等. 河北省鼠疫耶尔森菌多位点串联重复序列分析[J].中国媒介生物学及控制杂志,2015,26(2):141-144.
[17] Suchkov I, Vodop‘ianov AS, Vodop'ianov SO, et al. The multi-locus VNTR-analysis in studies of the population structure of Yersinia pestis in natural foci[J].Mol Gen Mikrobiol Virusol, 2004(4):19-28.
[18] Adair DM, Worsham PL, Hill KK, et al. Diversity in a variable-number tandem repeat from Yersinia pestis[J].J Clin Microbiol, 2000,38(4):1516-1519.
[19] Kawahara K, Tsukano H, Watanabe H, et al. Modification of the structure and activity of lipid A in Yersinia pestis lipopolysaccharide by growth temperature[J].Infect Immun, 2002,70(8):4092-4098.
[20] Li YJ, Cui YJ, Hauck Y, et al. Genotyping and phylogenetic analysis of Yersinia pestis by MLVA: insights into the worldwide expansion of Central Asia plague foci[J].PLoS One,2009,4(64):e6000.
[21] Li YJ, Cui YJ, Cui BZ,et al. Features of variable number of tandem repeats in Yersinia pestis and the development of a hierarchical genotyping scheme[J].PLoS One,2013,8(6): e66567.
[22] Hunter PR, Gaston MA. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity[J].J Clin Microbiol,1988,26(11):2465-2466.
[23] Li YJ, Dai EH, Cui YJ, et al. Different region analysis for genotyping Yersinia pestis isolates from China[J].PLoS One,2008,3(5):e2166.
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